GgaALTD1004957-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19072486-19073557:-
Coord C1 exon
chr2:19073457-19073557
Coord A exon
NA
Coord C2 exon
chr2:19072486-19072605
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
3' ss Seq
TTTTCCTTCCCTTTGTGCAGGGC
3' ss Score
10.6
Exon sequences
Seq C1 exon
CAGCTGCGGACAATAACTGAGCTGTCTGGCTAATGAAGGCCACCTGGATCAGGCTTCTGAAAAGAGCCAAAGGAGGACGTCTGAAGAATTCTGATATCTGT
Seq A exon
NA
Seq C2 exon
GGCTCGGCGGACTCCTACACCAGCCGTCCATCCGACTCCGATGTATCTCTGGAAGAAGACAGGGAAGCAGTGCGGAGAGAGGCAGAGCGACAGGCCCAGGCACAGTTGGAAAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCGGACAATAACTGAGCT
R:
GCTTTTTCCAACTGTGCCTGG
Band lengths:
215-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]