GgaALTD1006200-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000012225 | CIRBP
Description
cold-inducible RNA-binding protein [Source:RefSeq peptide;Acc:NP_001026518]
Coordinates
chr28:2973197-2973500:+
Coord C1 exon
chr28:2973197-2973274
Coord A exon
NA
Coord C2 exon
chr28:2973400-2973500
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATAGCAGGT
5' ss Score
-3.68
3' ss Seq
CGCATGAATGTTTCCAACAGCAG
3' ss Score
4.58
Exon sequences
Seq C1 exon
GTGGAGACAGAGGCTACGGCGGGAGCAGATTTGACTCCAGAAGCGGAGGATATAATGGCTCCAGAGACTACTATAATA
Seq A exon
NA
Seq C2 exon
CAGGAGTCAAGGTGGCTATGGAGACAGGTCTTCAGGAGGGTCCTACAGAGACAGCTACGACAGTTACGGTAAGTCCTGGTTCAAATGGGAGCGATGCGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012225-5-7,6-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACTCCAGAAGCGGAGGA
R:
GCTGTCTCTGTAGGACCCTCC
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]