HsaALTD0001448-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000099622 | CIRBP
Description
cold inducible RNA binding protein [Source:HGNC Symbol;Acc:1982]
Coordinates
chr19:1271553-1272050:+
Coord C1 exon
chr19:1271553-1271627
Coord A exon
NA
Coord C2 exon
chr19:1271980-1272050
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATAGCAGGT
5' ss Score
-3.68
3' ss Seq
AACGTTTGTCTGTCTTGCAGCCG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GAGGGGACCGAGGCTATGGGGGGAACCGGTTCGAGTCCAGGAGTGGGGGCTACGGAGGCTCCAGAGACTACTATA
Seq A exon
NA
Seq C2 exon
CCGGAGTCAGAGTGGTGGCTACAGTGACCGGAGCTCGGGCGGGTCCTACAGAGACAGTTATGACAGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099622-7-7,8-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.718 A=NA C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000322887, ENSP00000407512, ENSP00000412831, ENSP00000464906, ENSP00000465334, ENSP00000465558, ENSP00000465779, ENSP00000466025, ENSP00000466110, ENSP00000466131, ENSP00000466207, ENSP00000466216, ENSP00000466712, ENSP00000466897, ENSP00000467307, ENSP00000467449, ENSP00000467734, ENSP00000467848, ENSP00000467948, ENSP00000468097, ENSP00000468224, ENSP00000468645, ENSP00000468788
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGTCCAGGAGTGGGG
R:
AACTGTCTCTGTAGGACCCGC
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)