HsaALTD0001448-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000099622 | CIRBP
Description
cold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]
Coordinates
chr19:1271551-1272051:+
Coord C1 exon
chr19:1271551-1271628
Coord A exon
NA
Coord C2 exon
chr19:1271981-1272051
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATAGCAGGT
5' ss Score
-3.68
3' ss Seq
AACGTTTGTCTGTCTTGCAGCCG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GAGGAGGGGACCGAGGCTATGGGGGGAACCGGTTCGAGTCCAGGAGTGGGGGCTACGGAGGCTCCAGAGACTACTATA
Seq A exon
NA
Seq C2 exon
CCGGAGTCAGAGTGGTGGCTACAGTGACCGGAGCTCGGGCGGGTCCTACAGAGACAGTTATGACAGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099622-32-44,33-44-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.876 A=NA C2=0.702
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000322887, ENSP00000412831, ENSP00000464906, ENSP00000465334, ENSP00000465558, ENSP00000465779, ENSP00000466025, ENSP00000466110, ENSP00000466131, ENSP00000466207, ENSP00000466216, ENSP00000466712, ENSP00000466897, ENSP00000467307, ENSP00000467449, ENSP00000467734, ENSP00000467848, ENSP00000467948, ENSP00000468097, ENSP00000468645, ENSP00000468788, ENSP00000486590
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAGTCCAGGAGTGGGG
R:
AACTGTCTCTGTAGGACCCGC
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains