GgaALTD1010303-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011104 | GCG
Description
Glucagon Glicentin-related polypeptide Glucagon Glucagon-like peptide 1 Glucagon-like peptide 1(7-37) Glucagon-like peptide 1(7-36) Glucagon-like peptide 2 [Source:UniProtKB/Swiss-Prot;Acc:P68259]
Coordinates
chr7:20612247-20619634:+
Coord C1 exon
chr7:20612247-20612347
Coord A exon
NA
Coord C2 exon
chr7:20619539-20619634
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
3' ss Seq
TTGTAATTGTTTCCTTGTAGGGA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GGTACACTGATCAGAACCATGGAATTCCAGGACTTTCCAGCAAACATCTCTACACACATATGACCCACTTCCTCAAACAATGTTTTTCTTTGTCAGAATAG
Seq A exon
NA
Seq C2 exon
GGAACAGAGATGTGAGCAAAAGGCTTATCTTGTATAAACTTGTAGACCATGGTGTGAAACCCAATTTACAATGGAAGTCTGGCATACAGATCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011104-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTCCAGGACTTTCCAGCA
R:
TCTGTATGCCAGACTTCCATTGT
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]