GgaEX1026251 @ galGal4
Exon Skipping
Gene
ENSGALG00000011104 | GCG
Description
Glucagon Glicentin-related polypeptide Glucagon Glucagon-like peptide 1 Glucagon-like peptide 1(7-37) Glucagon-like peptide 1(7-36) Glucagon-like peptide 2 [Source:UniProtKB/Swiss-Prot;Acc:P68259]
Coordinates
chr7:20612332-20624751:+
Coord C1 exon
chr7:20612332-20612432
Coord A exon
chr7:20619539-20619634
Coord C2 exon
chr7:20624651-20624751
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTAATTGTTTCCTTGTAGGGA
3' ss Score
9.39
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
TTCTTTGTCAGAATAGGTAGGCTACTCAGAGGATGCTAAGTCATCTGATATATCTCTGAGAGAATGCCATGATAGTCGTGCCCAAGTTGTATCATATTCAG
Seq A exon
GGAACAGAGATGTGAGCAAAAGGCTTATCTTGTATAAACTTGTAGACCATGGTGTGAAACCCAATTTACAATGGAAGTCTGGCATACAGATCTCCA
Seq C2 exon
GCAATGAAAATGAAAAGTATTTATTTTATTGCTGGACTCCTTTTAATGATAGTTCAAGGCAGCTGGCAAAATCCTCTTCAGGATACAGAGGAGAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011104-'1-4,'1-0,3-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.273
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGGCTACTCAGAGGATGCT
R:
CCTGAAGAGGATTTTGCCAGCT
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]