GgaINT1013735 @ galGal4
Intron Retention
Gene
ENSGALG00000011104 | GCG
Description
Glucagon Glicentin-related polypeptide Glucagon Glucagon-like peptide 1 Glucagon-like peptide 1(7-37) Glucagon-like peptide 1(7-36) Glucagon-like peptide 2 [Source:UniProtKB/Swiss-Prot;Acc:P68259]
Coordinates
chr7:20616148-20619634:+
Coord C1 exon
chr7:20616148-20616230
Coord A exon
chr7:20616231-20619538
Coord C2 exon
chr7:20619539-20619634
Length
3308 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
3' ss Seq
TTGTAATTGTTTCCTTGTAGGGA
3' ss Score
9.39
Exon sequences
Seq C1 exon
ATTACTACATCTGCAAAGAAGTCTGAAAATAAAGCAGCATTAGTAGAAGACCGAGTGTAACTTCAGCCAATCTCCAGAACATG
Seq A exon
GTTAGTGTTATACTCTTTTTACTTAGCTAACAAGTAAAAATCAGAATACATTCAATTTTTTCTAGTTTGCCAGTCAGTTCTGATTACAAGGCACAGCTGTTTAGTTTATTTTATAGAGTCATATGAATGGTCTATATTTAATCTGAATAATTCATAGTATTTGCTAAGAGAGCATTTAGTATTACTTTCAATTATGAATATTGTCTTCTCAGAAAGTAAAGTAACTAGTACATACTTGACTGGCTCTTTTGCTTGCGCAAACTTATGAAGCTCCATTGATTTCAAATGGAGCAATTCCAATTTATTGTCAGTAGATAGTGTGGGATATTTGCATAGTTACAGTAACTCTTTCCTGTGGACACAGAGACCCTAATCTTTCTTTTCAGAAAGCAGCTTCTACTCTCTGAAGTGTAGCCATAGAGCTACACACCAATATATGCACACATTTTGTGCATGTACATGTATGTGAGCAACATTATGCTCCAATTGTTTTACATATGTCAGTTTCTAGATGTGTATGTTGCACCAGTTCCCAGAAGGAGAATGCAGGCCTCCTTTTGCCTTATTATCATGTAGCAAGGATAGGAAAATAAAAAGAGCTACACATTTCAGCCTCCTCTCTCCTATACTTTAGGTATATAACGGTACTAATAGCAAAACACTTGGAAAAAACAGTATTTTTTTTTTACTTTAACAAGTCAGCAACTTTCTCATTCAGTAAAATATTCAAATATTGAATATTTATTTTTTTACAAAACATCTTTGAAATAGAATGATATTCAAAGTGTGTGGTCCTATTCTATGAAAGGACATGCCACCTGGATTTTTCAGAAAGATCTTTAGGTCAATGTGCATCTGATTAGAATTTTTTTCTTATTTTGCTTCTGTAATTTCACCCTAGATTTCTGGTCCAGTGAGTACCATATGCAGTCTCAAACAGCAGCTATTACCTGGTGCTGAGTTGATGTTGTAGGAAACTTTGATCATCTCCAAATTTGGTGAACCCAAAAATAAAGAGTTTTTAATATTTCCAAATGATACTTTAAAAGATTAAGATGTAAATTTCTTGAAGGCAGGTCCTTTTCAGGTTCTATCTTTAGTCTGATTCATCTGAAGTACTGTTGCATGCCTGAACTATAATACAGAGGAGAGTGAGCCCTTGACTTGAGCCAAGAGGTGCCATCTAACTTTTACATCTGTGATGTAAAAGGAAAGATTTTATTCAGGATGTGTACGAACGCACCCTTCACACATGAATGACAGGTTTCTATTTCTGTTTAGTGTAGTGAACTTGTTTGCTGAGCCCTATAAATATGTATTACTCTAGATTCAATTATGGCAACTGATGGGTGCATGGTTCTTGATGGTAGTTCATTTCTTTCCTGTACTTTTTATTGTATGTGTATCACTTGAAAAACATAATCAGGCAGTCATCTTTTTAGATGACCTGCTAGATGATATAACCCGTGTAACATCCTGCTTACTGAGGTGCACTGGGCTGCTGTCTCATATGTTTTTTCCTGAAATTATCATACCGTAAACAAGAAACTTTATCTGACACAAGAAAATATACAAACCCAAACAAAAAGAGCCTGTATCCTGAAGAAGAAGGTATTGTCTTACATTCTGTATTCTTTGTTTAGAAACCTATGTGGCTTTAACTCAACATGCACTTATATTGTCTGTGACAATCTATTTCAACAAGTGTATCATCCTGGTGCAAAATAAAGGTCTAAACGACCCTTTTATCACCATCTGCTGTTGTATCAGCGTACTGCAGAGCCAGGGAGCATGCCTGCCTGCAGGAGACGTAAAGTTAACCAACTTCATGGACAGAGTGCCTTCTAATATTTAGTTCTGGAATTACAGCACGATTTTGCAGTGTTAAATTGCAAGTAAAAATAATGTTGAGATGAAGACAAAGTATCGCAGTGAAACTGGCATCTCAGAAAGGCAATTAGATTTATGAGCTTAAGATAGTTTCCAGGTTTATTTTGGCATTGTAGGCATTATGTCTTCAATATTACACTGTTGTTTGCCTAGGGAAGGTTGGAGATGGTAATTCAGGGCTATCTTTTCATTTCAAACCAGACTAGGTCATTTCAAACTAATAAGTCTGAAAATCCAAATTTAGTAGATATATATGCAACTTTGTATATGCTAGTCAATGACTGCAATTCCATGACTTCGAATGGCTTGGAGAGGAAGACTACAGTAACAAGCAGGAGGAAAGAGGACATGGGGAAGAGAACATGGAAAATAGAGAAAAGGAAGTAGTATTTAAAAAAGAAAACTGACAAAAAGGGAAAGTAAGGCTTTCAGAAATGACTGACGGAAGTGACTGAAGGTAATGGTGAGAGGGCCAGAAACTGTGGTCTTTACTTTTCAGCAGTGTCATTAGTAGTCACTTGCATTCTAGACAGAAATTTTAAAAAGGGACTATGAATATCAGTAGATGGATCCAAGAGCAGAGAAAAAAAATTATAAACACCCTCAAAAACTCGACATTTATTTTGTGGACTGTGTAAGTGAGACTTAGTGTTTCCCTACATATTTACTATGGTACCACAGCATGATCTTCAGGGCAGAGCTCTAGGAAGCATCTTTTTAGTTTTGTTTTCCACTCTAAGTTTATTCAGTTTATAGACTGTCTCAGTTATGTAATATTGGCTATGCCAATATGACTCTGGTCAACTAGCAGAAATTACCATTTCTGGCTTCAAGGAGCAGTGGTAGGGGAAATAAAAGAGTGTCTTGTAATATGCATGATTTGTGCCAAAATTAAGTGATGATCATTCTACACTGGAATATAGGCTGTCATTTATGTTCAGTGAGATATCAGCTGTAAATCCAGACCCTTCTTCCTCCTGAGCAGAACTGAAACTGAAAGTGAAGTCCTTAATATTTAATATCTCTGCTTGATGCACAATATTCTATATATATAATAATCATGTTTTATTTCTAGTGCACCTTTCATTTTTAAAAGAATTATCATATGTCAAAAAATCCATAAGGGAAGCTCTGTAGGAATTCCTTGACAGAGGATATCTCAGTTGTTGCTTCACTGACCCGTATTCCTTACTGGTGGGCTTTTTTTCAGCTGTCAGGAACACTGACAAGATTTGTCATTTTCTCCTACTGTTGTCACAAGATGGCTAAACACAGTTTATGTCACTGCTGCCCCATCACAGGCATGAATTTTCCCCCCATCTATTAGTGAATAGTTTAGGACTTTGGCAATATGTGTACAGAACATACACAGGTATGAAACTCACACCTATATTTTTGTTGTAATTGTTTCCTTGTAG
Seq C2 exon
GGAACAGAGATGTGAGCAAAAGGCTTATCTTGTATAAACTTGTAGACCATGGTGTGAAACCCAATTTACAATGGAAGTCTGGCATACAGATCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011104:ENSGALT00000018090:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]