GgaALTD1018848-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000012123 | Pax-6
Description
Paired box protein Pax-6 [Source:UniProtKB/Swiss-Prot;Acc:P47237]
Coordinates
chr5:5217602-5235509:-
Coord C1 exon
chr5:5235409-5235509
Coord A exon
chr5:5235315-5235408
Coord C2 exon
chr5:5217602-5231603
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
AATCTCTGTCTCCTTCCCAGGAC
3' ss Score
9.56
Exon sequences
Seq C1 exon
TTTTATTGTCATTGACATTTAAACTGTGTGGCAGGTTCCGGCGTAGGAATCGCCGAGCGGAGCCGCCAGGTGCCTCCTCGGGCCGCCGCGCCGCCGGACAG
Seq A exon
GTAACGGCCCCTCCGCGCCCCCACCCCGCGGCCTCCCCCGCCCCGTCGGGGCCCGGCGACGAGCGCGCTCCGCGGGCAGCGCACGGCCCAACAG
Seq C2 exon
GACCTCGGCATCGCACCGCCGCCGCAGCCTCAGTGGAGACAAACTATTCTGCGGGCAACTCTTTGGGAGCGCGTCAGTGCCCGGCGGTGCGCCCCGTCCTGCTGACAGCAGCGGTGCCGCGGACGGGATATGCCTCTGCGAGGTGAGTCCGCGCCGCTCCCCGCACCGCTCCGCAGCCCCGCGAGGGGCTCCGCTCCCCCCGCTCCTCCTCTCCATCCCATTTGCATTCCGCGGAGCTCCTGGGGAACTTTCCGGCCCGCAGCTCGCAAACTTTCTGTTCTCGCGCGGTGCCCTCTGGAAGAGCCACGCTGGGATACTGTGGCCAGCAGCACCGCGTCCCGTGGCACTGCCGGGCCGTGCGGGGCCGTAGGGGCCGTGTTGGGCCGTGCGGGCCCTGTGCGGCGCCGGGCGAGAGGGAGAGGGCGGGCGGGCAGCGGAGATGCCCGGGGGGCCGCTTTGTGCCGCGGGGCTCGGCCGGGGCCGGGACGCCGCTGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012123-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTGACATTTAAACTGTGTGGCA
R:
GACGCGCTCCCAAAGAGTTG
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]