GgaEX1047494 @ galGal4
Exon Skipping
Gene
ENSGALG00000012123 | Pax-6
Description
Paired box protein Pax-6 [Source:UniProtKB/Swiss-Prot;Acc:P47237]
Coordinates
chr5:5228919-5235840:-
Coord C1 exon
chr5:5235409-5235840
Coord A exon
chr5:5231462-5231603
Coord C2 exon
chr5:5228919-5228994
Length
142 bp
Sequences
Splice sites
3' ss Seq
AATCTCTGTCTCCTTCCCAGGAC
3' ss Score
9.56
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CGGCCGCAGCCTTAAGCGTGGGCCCGGGCCGGGGCAGCGCGGGGCGGGGGAGAGCCGTCGGGGGCGAGGGGCAGCCCCGGAGCCCCCGTCAGACGGAATGAGGGGCAGCCGGTCCGGGACGGGGGGGGGGCGGGGGCGATCCCAGCAGCCTGGCCCCGGGCGGGGGCCGTGCCGCGAGTGCCGTCGGGGCGGGCGGCGGCCGGGCTCGTGTCGCCTAAAATGTCTCATTAGCTAAGTACTGTCCGCCGTGACGTCACCGGGGCGGCCCAGCCAATGGGGGAGGCGCTGGCGTGGATATTAAGGGAAAGTTAGTGCAAAGGCAGCACCCCTCTTTTATTGTCATTGACATTTAAACTGTGTGGCAGGTTCCGGCGTAGGAATCGCCGAGCGGAGCCGCCAGGTGCCTCCTCGGGCCGCCGCGCCGCCGGACAG
Seq A exon
GACCTCGGCATCGCACCGCCGCCGCAGCCTCAGTGGAGACAAACTATTCTGCGGGCAACTCTTTGGGAGCGCGTCAGTGCCCGGCGGTGCGCCCCGTCCTGCTGACAGCAGCGGTGCCGCGGACGGGATATGCCTCTGCGAG
Seq C2 exon
AGGGCCGCCGGGAGTAGAGGCACGCAGATGTGCGAGCCCCCACGCTGCAGGAGAGGACAGCGCGCCCGGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012123_MULTIEX2-2/7=C1-3
Average complexity
C1
Mappability confidence:
86%=100=86%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCGTGTCGCCTAAAATGT
R:
TCTGCGTGCCTCTACTCCC
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]