GgaEX1047495 @ galGal4
Exon Skipping
Gene
ENSGALG00000012123 | Pax-6
Description
Paired box protein Pax-6 [Source:UniProtKB/Swiss-Prot;Acc:P47237]
Coordinates
chr5:5227190-5231603:-
Coord C1 exon
chr5:5231462-5231603
Coord A exon
chr5:5228919-5228994
Coord C2 exon
chr5:5227190-5227320
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTCCGTCTGCTTTGTCCTAGAGG
3' ss Score
8.03
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GACCTCGGCATCGCACCGCCGCCGCAGCCTCAGTGGAGACAAACTATTCTGCGGGCAACTCTTTGGGAGCGCGTCAGTGCCCGGCGGTGCGCCCCGTCCTGCTGACAGCAGCGGTGCCGCGGACGGGATATGCCTCTGCGAG
Seq A exon
AGGGCCGCCGGGAGTAGAGGCACGCAGATGTGCGAGCCCCCACGCTGCAGGAGAGGACAGCGCGCCCGGCTTCCAG
Seq C2 exon
GTCACAGCGGCGTGAACCAGCTCGGCGGGGTGTTCGTCAACGGGAGGCCGCTGCCCGACTCCACGCGGCAGAAGATCGTGGAACTCGCGCACAGCGGCGCGCGGCCGTGCGACATCTCCCGAATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012123_MULTIEX2-3/7=2-5
Average complexity
C2
Mappability confidence:
83%=100=83%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.727
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0029213=PAX=PU(30.9=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGCGGGCAACTCTTTGG
R:
GAGTTCCACGATCTTCTGCCG
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]