BtaEX6060183 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004561 | PAX6
Description
Bos taurus paired box 6 (PAX6), mRNA. [Source:RefSeq mRNA;Acc:NM_001040645]
Coordinates
chr15:63372934-63377393:-
Coord C1 exon
chr15:63377213-63377393
Coord A exon
chr15:63373345-63373421
Coord C2 exon
chr15:63372934-63372994
Length
77 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTGTTTTGTCTTAGGGG
3' ss Score
10.79
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGATCTGAGATTTGCTCTCACACACCAAACCAGCAGCGTCCGTGGAGAAAACTCTCGCCAGCAACTCCTTTAAAACACCGTCATTTCAAACCGTTGTGGTCTTTAAGCAACGACAACAGAAAAAAAAAAATCAAACAAAACTCTTGACAGGAGCTTTGACTAGAGAGGATGCCTCAGAAAG
Seq A exon
GGGGAAGACTTTAACTAGGAGCGCGCAGATGTGTGAGACCTTTTATTGTGAGAGTGGACAGACTTCCCAGATTTCAG
Seq C2 exon
AGCCCCATATTCGAGCCCCGTGGGATACCGAGGCCCCCAGCCAGCGCCAGCATGCAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004561-'6-3,'6-2,9-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0029213=PAX=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCGTGGAGAAAACTCTCG
R:
GTATCCCACGGGGCTCGAATA
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]