MmuEX6103400 @ mm10
Exon Skipping
Gene
ENSMUSG00000027168 | Pax6
Description
paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105668900-105691723:+
Coord C1 exon
chr2:105668900-105669049
Coord A exon
chr2:105679810-105679889
Coord C2 exon
chr2:105691565-105691723
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTGTTTTGTCTTAGGCA
3' ss Score
10.78
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TCTTTTCTTATCGTTGACATTTAAACTCTGGGGCAGGTCCTCGCGTAGAACCCGGTTGTCAGATCTGCTACTTCCCCCCGAGAAGCGGCTTTGAGAAGTGTGGGAACCAGCGCCACCAGACTCACCTGACACCCCACCCTCGGCTCACAG
Seq A exon
GCAGAAGACTTTAACCAAGGGCGGTGAGCAGATGTGTGAGATCTTCTATTCTAGAAGTGGACGTATATCCCAGTTCTCAG
Seq C2 exon
ATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAACACCAACTCCATCAGTTCTAACGGAGAAGACTCGGATGAAGCTCAGATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGAAATAGAACATCTTTTACCCAAGAGCAGATTGAGGCTCTGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168_MULTIEX1-4/10=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.959
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0004624=Homeobox=PU(29.8=31.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTTGAGAAGTGTGGGAA
R:
TTCTTTGCAGCTTCCGCTTCA
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types