MmuEX6103400 @ mm9
Exon Skipping
Gene
ENSMUSG00000027168 | Pax6
Description
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105509053-105520464:+
Coord C1 exon
chr2:105509053-105509206
Coord A exon
chr2:105519967-105520046
Coord C2 exon
chr2:105520404-105520464
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTGTTTTGTCTTAGGCA
3' ss Score
10.78
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
ACCCTCTTTTCTTATCGTTGACATTTAAACTCTGGGGCAGGTCCTCGCGTAGAACCCGGTTGTCAGATCTGCTACTTCCCCCCGAGAAGCGGCTTTGAGAAGTGTGGGAACCAGCGCCACCAGACTCACCTGACACCCCACCCTCGGCTCACAG
Seq A exon
GCAGAAGACTTTAACCAAGGGCGGTGAGCAGATGTGTGAGATCTTCTATTCTAGAAGTGGACGTATATCCCAGTTCTCAG
Seq C2 exon
AGCCCCGTATTCGAGCCCCGTGGGATCCGGAGGCTGCCAACCAGCTCCAGCATGCAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168-'0-16,'0-13,12-16=AN
Average complexity
A_C2
Mappability confidence:
94%=92=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=0.000 C2=0.727
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0029213=PAX=PU(13.7=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTAGAACCCGGTTGTCAG
R:
TGTTCTGCATGCTGGAGCTG
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: