RnoEX6018058 @ rn6
Exon Skipping
Gene
ENSRNOG00000004410 | Pax6
Description
paired box 6 [Source:RGD Symbol;Acc:3258]
Coordinates
chr3:95707386-95711677:+
Coord C1 exon
chr3:95707386-95707413
Coord A exon
chr3:95711173-95711253
Coord C2 exon
chr3:95711617-95711677
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTGTTTTGTCTTAGGCA
3' ss Score
10.74
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCGACGAAAGAGAGGATGCCTCTTAAAG
Seq A exon
GCAGAAGACTTTAACTAGGGGCGGGCGAGCAGATGTGTGAGATCTTCTATTCAAAGAGTGGACATATAGCCCAGTTTTCAG
Seq C2 exon
AGCCACGTATTCGAGCCCCGTGGGATCCGGAGGCTGCCAACCAGCTCCAGCATGCAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004410-'1-4,'1-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0029213=PAX=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACGAAAGAGAGGATGCC
R:
TGTTCTGCATGCTGGAGCTG
Band lengths:
89-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]