DreEX0053704 @ danRer10
Exon Skipping
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14946104-14953294:-
Coord C1 exon
chr25:14952968-14953294
Coord A exon
chr25:14948743-14948892
Coord C2 exon
chr25:14946104-14946157
Length
150 bp
Sequences
Splice sites
3' ss Seq
AATCTCTGTTTCCTTCGCAGGGA
3' ss Score
10.85
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CAAGACAACACGGTTAACGTCCGAGGTTTGCGTGTCTCGTAAGAAAGAAGAGGGAGAGTCCAATATTCGACCTGATTTCATCTGTTAAACAGGCTAGTATTTTCGTCGACTTCACAAAGGGGTTTGCAATCTCTCACAACCTTTTCCGAGGTTCTCTTTTCGAGGTTCCCTTGTTGGACTGGATATTATTTACTTTGGGACTAGTTTTGTGATTCGGATCCGGAGGGGCTCCATAGACACTCATTACTCTTCACTTGAAACTTGGAACCGTGCGTCTCATAACGAAATCCATTACGAATGTTTTGCTATCGGAACGGGTTTATTGAG
Seq A exon
GGAATTTAAATTTTCCACCCGAGATCAGTTGGAAACTATAAAAGACAAACTGTTTGAGGACGATTTTCTAGAACTCCAGAGTCTTCTCGTTATTGTAAACGAAGAACTTCAGCGAGGATACAAAGGCTGTTGGAACTATGCCTCAAAAAG
Seq C2 exon
AATACTATAACCGGGCCACGTGGGAGTCTGGTGTCGCGTCCATGATGCAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379-'0-7,'0-4,4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (disopred):
C1=NA A=1.000 C2=0.944
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0029213=PAX=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGACTTCACAAAGGGGTT
R:
CCACGTGGCCCGGTTATAGTA
Band lengths:
247-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]