MmuEX0033802 @ mm9
Exon Skipping
Gene
ENSMUSG00000027168 | Pax6
Description
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105515590-105520046:+
Coord C1 exon
chr2:105515590-105515708
Coord A exon
chr2:105515901-105516129
Coord C2 exon
chr2:105519967-105520046
Length
229 bp
Sequences
Splice sites
3' ss Seq
AATCTCTGTCTTCTTCCCAGGGA
3' ss Score
8.85
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTGCATTTGCATGTTGCGGAGTGATTAGTGGGTTTGAAAAGCGAACCGTGGCTCGGCCTCATTTCCCGCTCTGGTTCAGGCGCAGGAGGAAGTGTTTTGCTGGAGGATGATGACAGAG
Seq A exon
GGATCTGAGAATTGCTCTCACACACCAACCCAGCAGCGTCCGTGGAGAAAACTCTCACGAGCAACTCCTTTAAAATACCGTCATTTCAAACCGTTGTGGTCTTTAAGCAACAACAGGGGGGGGGGACCCAAACAACAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCCTCAAAACTCTTGACAGGAGCCTTGACAACGACGAAAGAGAGGATGCCTCTTAAAG
Seq C2 exon
GCAGAAGACTTTAACCAAGGGCGGTGAGCAGATGTGTGAGATCTTCTATTCTAGAAGTGGACGTATATCCCAGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168-'3-13,'3-9,9-13=AN
Average complexity
A_C3
Mappability confidence:
38%=83=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGCGGAGTGATTAGTGGG
R:
CTGAGAACTGGGATATACGTCCAC
Band lengths:
188-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types