BtaEX6060182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004561 | PAX6
Description
Bos taurus paired box 6 (PAX6), mRNA. [Source:RefSeq mRNA;Acc:NM_001040645]
Coordinates
chr15:63373345-63384294:-
Coord C1 exon
chr15:63384186-63384294
Coord A exon
chr15:63377213-63377393
Coord C2 exon
chr15:63373345-63373421
Length
181 bp
Sequences
Splice sites
3' ss Seq
AATCTCTGTCTCCTTCCCAGGGA
3' ss Score
9.15
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CGCGTAGAACGCGGCTGTCAGATCTGCCACTTCCCCCTGCGGAGCGGCGGTGAGAAGTGTGGGAACCCGCGCCGCCAAGCTCACCTGCCTCCCCGCCCTCGGTTCCCAG
Seq A exon
GGATCTGAGATTTGCTCTCACACACCAAACCAGCAGCGTCCGTGGAGAAAACTCTCGCCAGCAACTCCTTTAAAACACCGTCATTTCAAACCGTTGTGGTCTTTAAGCAACGACAACAGAAAAAAAAAAATCAAACAAAACTCTTGACAGGAGCTTTGACTAGAGAGGATGCCTCAGAAAG
Seq C2 exon
GGGGAAGACTTTAACTAGGAGCGCGCAGATGTGTGAGACCTTTTATTGTGAGAGTGGACAGACTTCCCAGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004561-'0-2,'0-1,6-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAACGCGGCTGTCAGATC
R:
ATCTGGGAAGTCTGTCCACTCT
Band lengths:
178-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]