GgaEX1047493 @ galGal4
Exon Skipping
Gene
ENSGALG00000012123 | Pax-6
Description
Paired box protein Pax-6 [Source:UniProtKB/Swiss-Prot;Acc:P47237]
Coordinates
chr5:5231462-5235840:-
Coord C1 exon
chr5:5235409-5235840
Coord A exon
chr5:5231688-5231815
Coord C2 exon
chr5:5231462-5231603
Length
128 bp
Sequences
Splice sites
3' ss Seq
CATTTCCCGCTCTGGTTAAGGCG
3' ss Score
3.16
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
CGGCCGCAGCCTTAAGCGTGGGCCCGGGCCGGGGCAGCGCGGGGCGGGGGAGAGCCGTCGGGGGCGAGGGGCAGCCCCGGAGCCCCCGTCAGACGGAATGAGGGGCAGCCGGTCCGGGACGGGGGGGGGGCGGGGGCGATCCCAGCAGCCTGGCCCCGGGCGGGGGCCGTGCCGCGAGTGCCGTCGGGGCGGGCGGCGGCCGGGCTCGTGTCGCCTAAAATGTCTCATTAGCTAAGTACTGTCCGCCGTGACGTCACCGGGGCGGCCCAGCCAATGGGGGAGGCGCTGGCGTGGATATTAAGGGAAAGTTAGTGCAAAGGCAGCACCCCTCTTTTATTGTCATTGACATTTAAACTGTGTGGCAGGTTCCGGCGTAGGAATCGCCGAGCGGAGCCGCCAGGTGCCTCCTCGGGCCGCCGCGCCGCCGGACAG
Seq A exon
GCGCAGGGAGGAAGTGTTTTGCTGGAAGATGATGACAGAGGTCAGGCTGTGCTAATGGGCCAGTGAAGAGCGGTGGAGGCGAGGCAGGAGCGGCCGCATCCATTAGCGCGGGGCCGCCAATCAGAGAG
Seq C2 exon
GACCTCGGCATCGCACCGCCGCCGCAGCCTCAGTGGAGACAAACTATTCTGCGGGCAACTCTTTGGGAGCGCGTCAGTGCCCGGCGGTGCGCCCCGTCCTGCTGACAGCAGCGGTGCCGCGGACGGGATATGCCTCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012123_MULTIEX2-1/7=C1-2
Average complexity
C1
Mappability confidence:
88%=100=88%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTAAGTACTGTCCGCCGT
R:
GTTTGTCTCCACTGAGGCTGC
Band lengths:
248-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]