GgaEX0000927 @ galGal3
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11026083-11028132:+
Coord C1 exon
chr17:11026083-11026172
Coord A exon
chr17:11026712-11026804
Coord C2 exon
chr17:11028006-11028132
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTTCTGTAACAGAAG
3' ss Score
9.62
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTCAGTTTTTGGGTTGTACGAGAAATATTAACAGCACAGACGTTAAAAATAAGGGCAGAAATACTGAGCCATTTTGTGAAAACTGCTAAA
Seq A exon
AAGCTTCTAGAGCTGAATAACCTCCATTCTCTTATGTCTGTGGTGTCAGCACTGCAAAGTGCACCCATCTTCAGACTGACCAAAACCTGGGCT
Seq C2 exon
CTCTTGAATCGCAAAGACAAGGCCACTTTTGAGAAGTTAGACTACTTACTTTCTAAAGAGGACAATTATAAAAGAACACGAGAGTACATCAGAAGCTTAAAAATGGTTCCAAGTATTCCATATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(14.9=100)
A:
PF0061714=RasGEF=FE(15.4=100)
C2:
PF0061714=RasGEF=FE(21.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAAATATTAACAGCACAGACGT
R:
AGCTTCTGATGTACTCTCGTGT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event