GgaEX0000927 @ galGal4
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10297473-10299522:+
Coord C1 exon
chr17:10297473-10297562
Coord A exon
chr17:10298102-10298194
Coord C2 exon
chr17:10299396-10299522
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTTCTGTAACAGAAG
3' ss Score
9.62
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTCAGTTTTTGGGTTGTACGAGAAATATTAACAGCACAGACGTTAAAAATAAGGGCAGAAATACTGAGCCATTTTGTGAAAACTGCTAAA
Seq A exon
AAGCTTCTAGAGCTGAATAACCTCCATTCTCTTATGTCTGTGGTGTCAGCACTGCAAAGTGCACCCATCTTCAGACTGACCAAAACCTGGGCT
Seq C2 exon
CTCTTGAATCGCAAAGACAAGGCCACTTTTGAGAAGTTAGACTACTTACTTTCTAAAGAGGACAATTATAAAAGAACACGAGAGTACATCAGAAGCTTAAAAATGGTTCCAAGTATTCCATATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906-'5-11,'5-9,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(14.9=100)
A:
PF0061714=RasGEF=FE(15.4=100)
C2:
PF0061714=RasGEF=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAAATATTAACAGCACAGACGT
R:
AGCTTCTGATGTACTCTCGTGT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]