HsaEX0052097 @ hg38
Exon Skipping
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr9:127050043-127069356:+
Coord C1 exon
chr9:127050043-127050132
Coord A exon
chr9:127052847-127052939
Coord C2 exon
chr9:127069230-127069356
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATTCCATATCTTTTTTTCAGAAA
3' ss Score
9.47
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTCAGTTTTTGGGTTGTACGAGAAATTCTAACAGCACAGACTTTAAAAATAAGGGCAGAAATCCTCAGCCATTTTGTGAAAATAGCCAAG
Seq A exon
AAACTTCTAGAACTCAACAACCTTCATTCTCTCATGTCTGTGGTATCAGCATTACAAAGTGCTCCCATCTTCAGGCTGACAAAAACCTGGGCT
Seq C2 exon
CTTTTAAATCGAAAAGACAAGACTACCTTTGAGAAATTGGACTACCTGATGTCGAAAGAAGATAATTACAAGCGGACACGGGAATATATCCGAAGCCTGAAGATGGTTCCAAGTATTCCCTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828_MULTIEX1-8/9=7-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(14.9=100)
A:
PF0061714=RasGEF=PD(0.1=0.0),PF0061714=RasGEF=FE(40.5=100)
C2:
PF0061714=RasGEF=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTTTTTGGGTTGTACGAGA
R:
CGGATATATTCCCGTGTCCGC
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development