GgaEX0001201 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1087504-1091782:+
Coord C1 exon
chr18:1087504-1087677
Coord A exon
chr18:1088350-1088557
Coord C2 exon
chr18:1091617-1091782
Length
208 bp
Sequences
Splice sites
3' ss Seq
CGTTCCCCCCCTGCCCTCAGGCA
3' ss Score
10.72
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTTGTGGACTACAGAGTGGAGTTCAGCAAGTGGTGGGTGGCGGAATTCAAGACCATCAAGTTTCCCTCCCAGGGAACCGTCTTTGACTTTTACATCGATCCAGAAACAAAGAAGTTTGAGCCTTGGTCTAAACTGATCCCCCAGTTTGAATTTGATCCAGAAGTGCCATTACAG
Seq A exon
GCATGCCTGGTGCCCACGGCCGAGACGGTCCGGCTGCGGTACTTCATGGATCGGCTCCTGGAGCGCCAGCGCCCCGTGATGCTGGTGGGCAGTGCGGGCACTGGGAAGTCTGTGCTGGTGGGGGACAAACTCTCCTTGCTGGACACGGACGCATACGTGGTGAAGAAGGTCCCGTTCAACTACTACACCACCTCTGCCATGCTGCAAG
Seq C2 exon
GTGTGCTTGAGAAGCCTCTAGAGAAAAAGGCTGGCAGAAATTATGGCCCTCCAGGCACCAAGAAGCTCATCTACTTCATCGATGACATGAACATGCCAGCAGTGGATGCATATGGGACGGTGCAGCCCCATACGCTCATCAGGCAGCACCTGGACTATGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'29-31,'29-28,30-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.4=100)
C2:
PF127752=AAA_7=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCGGAATTCAAGACCAT
R:
CAATGCCCATAGTCCAGGTGC
Band lengths:
305-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]