RnoEX0028645 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52518329-52531656:-
Coord C1 exon
chr10:52531483-52531656
Coord A exon
chr10:52530831-52531038
Coord C2 exon
chr10:52518329-52518494
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCTATTACATTCTGTTCCAGGCT
3' ss Score
8.13
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CTTGTAGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTCAAAACGGTCAAATTTCCTTCCCAAGGAACTGTCTTTGACTACTACATAGACCAAGAGACCAAGAAATTTGAGCCTTGGGGCAAGCTCATCCCCCAGTTTGAATTTGACCCTGAGATGCCTTTGCAA
Seq A exon
GCTTGTTTGGTACACACAAGTGAGACCATCCGTGTGTGCTACTTCATGGAGCGGCTCATGGAACGGCGGCGGCCGGTTATGCTGGTCGGCTCTGCAGGCTCAGGCAAGTCTGTGCTGGTGGGAGCAAAGCTGTCCAGCCTTAACCCTGAGGAATACATGGTGAAAAATGTGCCCTTCAACTACTATACTACATCAGCAATGCTGCAAG
Seq C2 exon
CTGTCCTGGAGAAACCTCTAGAAAAGAAAGCTGGAAGGAATTATGGCCCTCCAGGTAACAGGAAACTCATCTACTTCATCGATGACATGAACATGCCCGAGGTGGACGCCTATGGGACAGTACAGCCCCACACTGTCATCAGGCAGCACCTAGACTATGGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'51-51,'51-50,52-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.4=100)
C2:
PF127752=AAA_7=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAATGGTGGCTGACTGA
R:
TGATGACAGTGTGGGGCTGTA
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]