MmuEX6086221 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65992704-66005832:-
Coord C1 exon
chr11:66005659-66005832
Coord A exon
chr11:66005002-66005209
Coord C2 exon
chr11:65992704-65992869
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCTATCACATTCTGTTCCAGGCT
3' ss Score
8.61
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CTTGTAGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTTAAAACAGTCAAGTTTCCTTCCCAAGGAACTGTCTTTGACTACTACATAGACCCAGAGACCAAGAAATTTGAGCCCTGGGCCAAGCTCATCCCCCAGTTTGAATTTGACCCAGAGATGCCTTTGCAG
Seq A exon
GCTTGTTTGGTACACACAAGTGAGACCATCCGGGTGTGCTACTTCATGGAGCGGCTCATGCAATGGAGGCGGCCGGTTATGCTGGTTGGCCCTGCAGGCTCAGGCAAGTCTGTGCTGGTGGGAGCAAAGCTGTCCAGCCTTAACCCTGAGGAATACATGGTGAAAAATGTGCCCTTCAACTACTATACTACGTCAGCAATGCTGCAAG
Seq C2 exon
CTGTCTTGGAGAAACCTCTAGAAAAGAAAGCTGGCAGGAATTATGGCCCTCCAGGCAACAGGAAACTCATCTATTTCATCGATGACATGAATATGCCCGAGGTGGATGCCTATGGCACAGTACAGCCCCACACTGTCATCAGGCAGCACCTAGACTATGGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'42-50,'42-48,43-50=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.4=100)
C2:
PF127752=AAA_7=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAATGGTGGCTGACTGA
R:
TGATGACAGTGTGGGGCTGTA
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types