GgaEX0001923 @ galGal3
Exon Skipping
Gene
ENSGALG00000001637 | PSMD5
Description
NA
Coordinates
chr17:8975146-8976368:-
Coord C1 exon
chr17:8976255-8976368
Coord A exon
chr17:8975706-8975834
Coord C2 exon
chr17:8975146-8975255
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCAACTGTTTTTGTTTACAGGCC
3' ss Score
8.41
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTTGGGAGGATTGTTGAAAATTCAGATGCTGTTAGAGAAATTCTCAACAGTCCTGAAGTACTACGGCAGATCATAAATTGCATTGGTGGTGAGAAAATAGCAGTGGCTAAAGAG
Seq A exon
GCCATCAAATCTCTCTCAAGAATAGCCCAAACACAAGATGGCTTAGAGGCTTTGTTTGTGAGCAGCTTGTTAAGTGACTTGAAAAATGTCATGGCAACAAATGATGTTGTTCGGTACAGAGTGTATGAG
Seq C2 exon
CTAATTGTTGAGATATCTTCAGTGTCAGCAGATTCACTTAATTACTGTGCAAACAGTGGGTTAATATCAGACTTAATTGGAGAGTTGACTGGAGATGACGTTCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001637_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(7.3=100)
A:
PF105084=Proteasom_PSMB=FE(8.3=100)
C2:
PF105084=Proteasom_PSMB=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGATTGTTGAAAATTCAGATGC
R:
ACCAGAACGTCATCTCCAGTCA
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]