HsaEX0050625 @ hg38
Exon Skipping
Gene
ENSG00000095261 | PSMD5
Description
proteasome 26S subunit, non-ATPase 5 [Source:HGNC Symbol;Acc:HGNC:9563]
Coordinates
chr9:120829099-120831945:-
Coord C1 exon
chr9:120831832-120831945
Coord A exon
chr9:120831331-120831459
Coord C2 exon
chr9:120829099-120829208
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCTTTCGTTATAAGGCT
3' ss Score
6.72
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATTGGAAGAATTGTTGAAAATTCTGATGCTGTTACTGAGATTCTAAATAATGCTGAATTACTAAAACAAATTGTTTATTGCATTGGTGGAGAGAATCTATCTGTAGCAAAAGCG
Seq A exon
GCTATCAAATCCCTGTCAAGAATATCACTAACCCAAGCTGGACTGGAGGCTTTATTTGAAAGCAATCTGCTGGATGATTTGAAAAGTGTAATGAAAACAAATGACATTGTTCGATACAGGGTGTATGAG
Seq C2 exon
CTAATTATAGAGATTTCTTCCGTGTCACCAGAATCTTTAAACTACTGTACCACAAGTGGATTGGTAACCCAGCTCCTGAGAGAGCTGACTGGTGAGGATGTGTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095261-'12-11,'12-8,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=PD(19.4=87.5)
A:
PF105084=Proteasom_PSMB=FE(21.2=100)
C2:
PF105084=Proteasom_PSMB=FE(11.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGTTGAAAATTCTGATGCTGT
R:
ACACATCCTCACCAGTCAGCT
Band lengths:
210-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development