RnoEX0070697 @ rn6
Exon Skipping
Gene
ENSRNOG00000018809 | Psmd5
Description
proteasome 26S subunit, non-ATPase 5 [Source:RGD Symbol;Acc:1308434]
Coordinates
chr3:13927528-13928733:-
Coord C1 exon
chr3:13928620-13928733
Coord A exon
chr3:13928209-13928337
Coord C2 exon
chr3:13927528-13927637
Length
129 bp
Sequences
Splice sites
3' ss Seq
AAATATTTTCTTTCTATAAGGCT
3' ss Score
4.77
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
ATTGGGAGGATTGTTGAGGATTCGGAAGCTGTTACTGAGGTCCTGAGTAATGCTGAACTCCTGAGGCAGGTTGTCTGCTGCATTGGTGGAGAGAATTTATCTGTGGCTAAAGCG
Seq A exon
GCTATCAAATCCCTGTCAAGAATATCACTAACCCAAGCTGGACTGGAAGCTCTATTTGAAAGTAATTTGCTGGACGATTTGAAAAATGTCATGAAAACAAATGATGTTGTTCGATACAGGGTGTATGAG
Seq C2 exon
CTAATTATAGATATTTCTTCTGTGTCATCAGAATCGTTAAATTACTGTACCACAAGTGGACTGGTGACCCAGCTCCTGAGAGAGCTGACGGGTGAGGACGTGTTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018809-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(10.9=100)
A:
PF105084=Proteasom_PSMB=FE(12.3=100)
C2:
PF105084=Proteasom_PSMB=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGATTGTTGAGGATTCGG
R:
TGACTAACACGTCCTCACCCG
Band lengths:
220-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]