GgaEX0002486 @ galGal3
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
NA
Coordinates
chr21:2713676-2718603:-
Coord C1 exon
chr21:2718397-2718603
Coord A exon
chr21:2714608-2714829
Coord C2 exon
chr21:2713676-2713870
Length
222 bp
Sequences
Splice sites
3' ss Seq
TTCCTATGCCCCCTCTGCAGACC
3' ss Score
9.4
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
ACAAATGCAAGGATGAATGCAAGTTCAATGCTGTCTGCCTGAACCGCCGTGGCACGGCGCGCTGCTCCTGCGACCGCATCACTTGTGATGGCACCTACCGGCCTGTCTGTGCCCGCGACAGCCGCACCTACAGCAACGACTGTGAGCGGCAGAAAGCCGAGTGCCACCAGAAAGCTGCCATCCCAGTGAAGCACAGCGGACCCTGTG
Seq A exon
ACCTGGGTACTCCCAGCCCCTGCCTGAGCGTGGAGTGCACTTTTGGGGCCACCTGCGTGGTGAAGAACCGGGAGCCCGTGTGCGAGTGCCAGCAGGTGTGCCAGGGCCGCTATGACCCCGTCTGCGGCAGCGACAACCGCACCTACGGCAACCCCTGCGAGCTCAACGCCATGGCCTGCGTCCTCAAGAGAGAGATCAGGGTGAAGCACAAGGGGCCCTGCG
Seq C2 exon
ACCGCTGTGGCAAGTGCCAGTTTGGGGCCATCTGCGAGGCGGAGACGGGGCGGTGCGTGTGCCCCACGGAGTGCGTGCCCTCCTCCCAGCCTGTCTGTGGCACAGATGGCAACACCTACGGCAGCGAGTGTGAGCTCCACGTCCGAGCGTGCACGCAGCAGAAGAACATTTTGGTGGCTGCCCAAGGCGACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'11-15,'11-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=68.6)
A:
PF0764810=Kazal_2=WD(100=54.7)
C2:
PF0005016=Kazal_1=WD(100=81.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGCTGTCTGCCTGAACC
R:
GTAGGTGTTGCCATCTGTGCC
Band lengths:
302-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]