GgaEX0002486 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2728954-2733881:-
Coord C1 exon
chr21:2733675-2733881
Coord A exon
chr21:2729886-2730107
Coord C2 exon
chr21:2728954-2729148
Length
222 bp
Sequences
Splice sites
3' ss Seq
TTCCTATGCCCCCTCTGCAGACC
3' ss Score
9.4
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
ACAAATGCAAGGATGAATGCAAGTTCAATGCTGTCTGCCTGAACCGCCGTGGCACGGCGCGCTGCTCCTGCGACCGCATCACTTGTGATGGCACCTACCGGCCTGTCTGTGCCCGCGACAGCCGCACCTACAGCAACGACTGTGAGCGGCAGAAAGCCGAGTGCCACCAGAAAGCTGCCATCCCAGTGAAGCACAGCGGACCCTGTG
Seq A exon
ACCTGGGTACTCCCAGCCCCTGCCTGAGCGTGGAGTGCACTTTTGGGGCCACCTGCGTGGTGAAGAACCGGGAGCCCGTGTGCGAGTGCCAGCAGGTGTGCCAGGGCCGCTATGACCCCGTCTGCGGCAGCGACAACCGCACCTACGGCAACCCCTGCGAGCTCAACGCCATGGCCTGCGTCCTCAAGAGAGAGATCAGGGTGAAGCACAAGGGGCCCTGCG
Seq C2 exon
ACCGCTGTGGCAAGTGCCAGTTTGGGGCCATCTGCGAGGCGGAGACGGGGCGGTGCGTGTGCCCCACGGAGTGCGTGCCCTCCTCCCAGCCTGTCTGTGGCACAGATGGCAACACCTACGGCAGCGAGTGTGAGCTCCACGTCCGAGCGTGCACGCAGCAGAAGAACATTTTGGTGGCTGCCCAAGGCGACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041_MULTIEX3-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=68.6)
A:
PF0764810=Kazal_2=WD(100=54.7)
C2:
PF0005016=Kazal_1=WD(100=81.8)
Main Skipping Isoform:
ENSGALT00000003171fB270
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGCTGTCTGCCTGAACC
R:
GTAGGTGTTGCCATCTGTGCC
Band lengths:
302-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]