GgaEX0002985 @ galGal3
Exon Skipping
Gene
ENSGALG00000002375 | Q9W737_CHICK
Description
NA
Coordinates
chr17:8518763-8519981:+
Coord C1 exon
chr17:8518763-8518876
Coord A exon
chr17:8519660-8519779
Coord C2 exon
chr17:8519881-8519981
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGGCACCTGTCCCTGTGCAGGAG
3' ss Score
8.02
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACCCAACTGCCAGACCAATATCAATGAATGTGCTTCCAACCCCTGCCTGAACCAAGGCACGTGCATCGATGATGTGGCCGGCTACACCTGCAACTGCCTCCTGCCCTACACAG
Seq A exon
GAGCCACCTGTGAGGACGTGCTGGCCCCCTGCGCCGGCGGCCCCTGCAAGAACGGCGGCGAGTGCCGGGAGTCAGAGGACTACAAGAGGTTCTCGTGCAGCTGCCCGCCCGGCTGGCAAG
Seq C2 exon
GCCAGACGTGTGAGATTGACATCAATGAGTGTGTGAAGAGCCCGTGCCGCAATGGGGCCACGTGTCAGAACACCAACGGGAGCTACCGCTGCCTGTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375-'14-18,'14-16,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
A:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(93.8=73.2)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAACTGCCAGACCAATA
R:
CGGTAGCTCCCGTTGGTGTT
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]