GgaEX0002985 @ galGal4
Exon Skipping
Gene
ENSGALG00000002375 | NOTCH1
Description
notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
Coordinates
chr17:7830335-7831605:+
Coord C1 exon
chr17:7830335-7830448
Coord A exon
chr17:7831232-7831351
Coord C2 exon
chr17:7831453-7831605
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGGCACCTGTCCCTGTGCAGGAG
3' ss Score
8.02
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACCCAACTGCCAGACCAATATCAATGAATGTGCTTCCAACCCCTGCCTGAACCAAGGCACGTGCATCGATGATGTGGCCGGCTACACCTGCAACTGCCTCCTGCCCTACACAG
Seq A exon
GAGCCACCTGTGAGGACGTGCTGGCCCCCTGCGCCGGCGGCCCCTGCAAGAACGGCGGCGAGTGCCGGGAGTCAGAGGACTACAAGAGGTTCTCGTGCAGCTGCCCGCCCGGCTGGCAAG
Seq C2 exon
GCCAGACGTGTGAGATTGACATCAATGAGTGTGTGAAGAGCCCGTGCCGCAATGGGGCCACGTGTCAGAACACCAACGGGAGCTACCGCTGCCTGTGCCGGGTGGGCTTCGCGGGCCGCAACTGCGACACCGACATCGACGACTGCCAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375_MULTIEX1-11/15=10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.3=71.8)
A:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
C2:
PF0000822=EGF=PD(6.1=3.8),PF0764510=EGF_CA=WD(100=73.1),PF0000822=EGF=PU(9.7=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAACTGCCAGACCAATAT
R:
CAGTCGTCGATGTCGGTGTC
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]