GgaEX0003046 @ galGal3
Exon Skipping
Gene
ENSGALG00000002420 | EGFL7
Description
NA
Coordinates
chr17:8431311-8433423:-
Coord C1 exon
chr17:8433328-8433423
Coord A exon
chr17:8432096-8432260
Coord C2 exon
chr17:8431311-8431375
Length
165 bp
Sequences
Splice sites
3' ss Seq
AGCCATCCCTGTGCTTTCAGATG
3' ss Score
8.04
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTCTGTGCCAGGTGCCGTGCCAGAATGGTGGCCGCTGCTCCTTCCCTGGAAGATGTGCCTGCCCTCCCGGCTGGATGGGGCCTTCCTGCCAGACAG
Seq A exon
ATGCGGATGAGTGTGCAGGCCGGAGCCACGGGTGCAGTCAGCTCTGCATCAATACAGCTGGGAGCTTCCACTGTGCCTGCCGGGATGGCTTTAGCCTCGCTGCTGATAACAAGGCATGCCAGCCCGTGGTGCCAGGCCCCAAGCCAGGAACCTTCAGCCAAGCAG
Seq C2 exon
ATCCCTCCAGTGAAGTGAAGGAAGAAATGAAAGACCTGAAGAACAGAGTGGAAGCACTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.727
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(87.9=87.9)
A:
PF146701=FXa_inhibition=WD(100=64.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGCCGTGCCAGAAT
R:
CTGCTCCAGTGCTTCCAC
Band lengths:
154-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]