RnoEX0031153 @ rn6
Exon Skipping
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4041763-4042797:+
Coord C1 exon
chr3:4041763-4041858
Coord A exon
chr3:4042011-4042175
Coord C2 exon
chr3:4042733-4042797
Length
165 bp
Sequences
Splice sites
3' ss Seq
GACACCTTCGTTTCTTACAGATG
3' ss Score
10.63
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CAATATGCCAGCCACCGTGTGGGAATGAAGGGAGTTGCATCCGCCCAGGCCGCTGCCGCTGCCCTGTGGGATGGCAGGGAGATACTTGCCAGATAG
Seq A exon
ATGTTGATGAATGCAGTACAGGAGAGGCCAGGTGTCCCCAGCGCTGTGTCAATACTGTGGGAAGTTACTGGTGCCAGTGTTGGGAGGGGCAGAGCCCATCTGCAGATGGGGTGCTCTGCCTGCCTAAGGAGGGGCCCTCCCCGGTGGCACCAAGTCCCACGCCAG
Seq C2 exon
GAGTGGACAGCGTGGTGAGAGAGGAGGTGTACAAGCTGCAGGCCCGGGTTGATGTATTAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388-'15-15,'15-12,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.091
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=84.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=71.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATATGCCAGCCACCGTGTG
R:
TCTAATACATCAACCCGGGCCT
Band lengths:
156-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]