DreEX0029202 @ danRer10
Exon Skipping
Gene
ENSDARG00000100657 | egfl7
Description
EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
Coordinates
chr21:7670603-7683235:-
Coord C1 exon
chr21:7683140-7683235
Coord A exon
chr21:7681141-7681287
Coord C2 exon
chr21:7670603-7670679
Length
147 bp
Sequences
Splice sites
3' ss Seq
AAAGGCTGTTTGTCTCTTAGATG
3' ss Score
7.05
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CGGTATGTGAACAGTCTTGTGCAAACGGAGGCTCGTGTGTAAGGCCCAATCACTGTGCCTGTCTGAGAGGATGGACAGGACGATTCTGCCAAATAG
Seq A exon
ATGTGGACGAGTGTAAGGAGGCTCAGAGCTGCTCTCAGAAGTGTGTGAATACGCTGGGCAGTTTTCAATGTGTGTGTGAGGAGGGATTCAGTCTGGATGAAGATAAAGTCACATGTTCAAAAAATCCTGCTTCCTCACGGAACACTG
Seq C2 exon
GTGGAGGTTTGGGGTTGGTGGAGAACGTTACTGAAGAGGTTCAGATCCTAAAAAACCGAGTGGAGCTCCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100657_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(85.3=87.9),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTATGTGAACAGTCTTGTGC
R:
GAACCTCTTCAGTAACGTTCTCCA
Band lengths:
138-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]