BtaEX6098221 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025410 | EGFL8
Description
Bos taurus EGF-like-domain, multiple 8 (EGFL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001099187]
Coordinates
chr23:27025385-27025914:-
Coord C1 exon
chr23:27025819-27025914
Coord A exon
chr23:27025540-27025710
Coord C2 exon
chr23:27025385-27025464
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTTTCCGGTAATTAGATG
3' ss Score
4.75
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CCATCTGCGCCAAGCCCTGCCAGAATGGAGGTGTCTGCGTTCGGCCGGACCAGTGCGAGTGCGCCCGGGGCTGGGGTGGGAAGCACTGTCACGTGG
Seq A exon
ATGTGGATGAATGCAGAACCGGCGTCACTCTCTGCTCGCATCGCTGCCTCAATACGGCGGGCAGTTTCACCTGTGGCTGCCCGCACGGCCTGGTGCTGGGCCTGGATGGGCGTACTTGCGCGGAGAGGGCCCCAGAGCCCCCAACCAGTGCCAGCATCCTCAATGTGGCCG
Seq C2 exon
TTCGTGAGGCTGGACTTGATAAGCGTGCCCTGAGGCGGGAGATTGGCGAGCTGCGAGGCCGCCTGGAGAGGCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025410-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.5=84.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=69.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCTGCCAGAATGGAG
R:
CTGCTCCAGCCTCTCCAGG
Band lengths:
166-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]