MmuEX6077141 @ mm10
Exon Skipping
Gene
ENSMUSG00000015467 | Egfl8
Description
EGF-like domain 8 [Source:MGI Symbol;Acc:MGI:1932094]
Coordinates
chr17:34614009-34615320:-
Coord C1 exon
chr17:34614484-34615320
Coord A exon
chr17:34614170-34614340
Coord C2 exon
chr17:34614009-34614091
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTCTGGTAACTAGATG
3' ss Score
6.05
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCAGACGCTGCTGGTTCCTCTCCGTTACAACGAGTCCTATAGTCAACCGGTGTACAAACCCTACCTGACCTTGTGTGCGGGGAGGCGCATATGTAGCACCTACAGGTGAGAGGTGAAGCCCCTAAGGCTCCCAGGTCTCAAAGGGACCCCAAGAGGCAAGTCCAGGATGGGTACCTACAGATATGAGCCTGCTTCTGTGTTCTAGGACCACATACCGTGTGGCCTGGCGGGAGGTGAGGCGGGAGGTACCACAGACACACGTGGTGTGCTGTCAGGGCTGGAAGAAGCCACACCCAGGAGCTCTCACCTGTGATGGTGAGGAGGCTGGGACTTCAGGCTGTGGGAGGCTTGCTGGGAGCTGGCCCTGTGTCTGGGTCTTAACTGTCTTCTCAAATGGACCCCAGCCATCTGCTCCAAGCCTTGTCTTAATGGAGGTGTCTGCACTGGACCAGACCGGTGCGAGTGTGCCCCAGGCTGGGGAGGAAAGCATTGCCACGTGG
Seq A exon
ATGTCGATGAATGCAGGGCCAGCCTTACCCTCTGCTCTCATGGCTGCCTCAACACACTGGGCAGCTTCTTGTGCAGCTGTCCACACCCCCTGGTGCTGGGTCTCGATGGACGCACCTGTGCAGGGGGGCCTCCAGAGTCCCCGACAAGTGCCAGCATCCTCAGTGTGGCAG
Seq C2 exon
TTCGGGAAGCAGACAGCGAAGAGGAGCGAGCCCTGAGGTGGGAGGTTGCAGAGCTTCGTGGGCGTCTGGAGAAGCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015467-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.115 C2=0.012
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=81.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=69.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTGTGATGGTGAGGAGG
R:
GAAGCTCTGCAACCTCCCAC
Band lengths:
254-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types