RnoEX6061561 @ rn6
Exon Skipping
Gene
ENSRNOG00000000436 | Egfl8
Description
EGF-like-domain, multiple 8 [Source:RGD Symbol;Acc:1549706]
Coordinates
chr20:4378836-4379385:-
Coord C1 exon
chr20:4379290-4379385
Coord A exon
chr20:4378997-4379167
Coord C2 exon
chr20:4378836-4378915
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTTTCTGGTCACTAGATG
3' ss Score
6.93
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCATCTGCTCTAAGCCTTGTCTTAATGGAGGTGTGTGCGCCGGACCGGACCAGTGCGAGTGTGCCTCAGGCTGGGCAGGGAAGCACTGCCACGTGG
Seq A exon
ATGTGGATGAATGCAGGACCAGCCTTACCCTCTGCTCTCATGGCTGTCTCAACACGCTGGGCAGCTTCACCTGCAGCTGTCCGAACCCCCTGGTGCTGGGGCCCGATGGACGCGCCTGTGCAGGGGGCCCTCCGGAGTCCTCGACGAGTGCTGGCATCCTCAGTGTGGCAG
Seq C2 exon
TTCGGGAAGCAGACAGCGAGGAGCATGCCCTGAGGCGGGAGGTTGCAGAGCTTCGTGGGCGTCTAGAGAGGCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000436-'7-13,'7-12,8-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.129 C2=0.037
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(90.6=87.9),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=69.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTGCTCTAAGCCTTGTCT
R:
CTGCTCCAGCCTCTCTAGACG
Band lengths:
176-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]