GgaEX0003137 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4691264-4694170:-
Coord C1 exon
chr23:4693649-4694170
Coord A exon
chr23:4692031-4692098
Coord C2 exon
chr23:4691264-4691434
Length
68 bp
Sequences
Splice sites
3' ss Seq
AATGTATATGTTTTCCTCAGTTC
3' ss Score
6.77
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
AATGTCTGAGGACACTGTCCACAACTTACCAACTGCCCTCGACAGCGTATCTTATGAAATACAGAATCGAGCAGGATCTGAAAACTCACTGCTGGATGATGACGACGATGATGATTATTTTCTGAACTCTGGGGATTTGGCAAGCATACCTGTTGTTGGGAGTGACAACGAAGATGATCAAAATTTCACTCCGAAAGACACTCTCCCATCTGAAGACCATCTGGAAGAGGGCAAGAGGATTACAGAACACGAGCTGGACAGTGAAAAAGATATTCAGATCGAAAATGCAATCCAGAAGGATCTCACTTCACCTTTTGAGCAGGGTCCTGTATTTAAATCAATTCGAAAAGATTTTAGCATAACGAGAGATAATGGCAAAGAGACTTTTTCAACAAAGGACAAGAATAGAGAAGGAAATCTTCAAGAACATGAAAAACGGTTGGAAAAAATCCCTAAAGATACGGATTCTAGATTGAAAAGCAGTTTTCTTGACAAAGCAG
Seq A exon
TTCATAATCAAGTAGAAGAAACATTACGGACGCAGTTAGCGCCACAAACTCCAGAAACTAACTTCAGG
Seq C2 exon
GAGTCTAGCTACCTATTTTCTAGTAAGGAATCTATTGGACAAGAGCTGGGGAATTCCTTTGCACCAAATATTAGAATTAAGGAGGAGCCTTTGGATGACGAATATGATAAAGCTATGGCCCCACAGCAGGGACTATTAGACAAAATTAAAGATGAACCTGATAATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'1-4,'1-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.957 C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAACATGAAAAACGGTTGGA
R:
TCGTCATCCAAAGGCTCCTCC
Band lengths:
181-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]