HsaEX0072914 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35358925-35361789:+
Coord C1 exon
chr1:35358925-35359446
Coord A exon
chr1:35361194-35361255
Coord C2 exon
chr1:35361619-35361789
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCCTTTCAATAGCTA
3' ss Score
9.36
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AATGTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGATAGCTTGGAAGTAGAGAGAAGAGTCACACAGCATGAATCAGACAATGAAAATGAAATACAAATTCAAAATAAGTTAAAAAAAGACTTTCCTAAACAATTTGATCAGGTTTCTGTCTTTAAATCAATACGGAAAGATTTTAGTCTAGTAAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATGAACGTGAAAAACGGTTGGATAAACCCCATAAAGATTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG
Seq A exon
CTAATCAAGTTGAAGAAACATTACATACCCATTTACCACAAACCCCAGAAACAAACTTTAGG
Seq C2 exon
GATTCCAGCTACCCATTTGCCAATAAAGAATCCATTGGTTCGGAACTGGGGAATTCCTTTGCATCAAATATTAGAATTAAAGAAGAACCTTTGGATGATGAGTATGACAAAGCAATGGCACCACAGCAGGGACTACTAGACAAAATAAAAGATGAACCTGACAATGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'35-26,'35-25,39-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.905 C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000314607fB8040
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAAAGAGACATTTTCTGGA
R:
TGGCAAATGGGTAGCTGGAAT
Band lengths:
148-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development