GgaEX0003137 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr23:4318738-4324570:-
Coord C1 exon
chr23:4324049-4324570
Coord A exon
chr23:4322431-4322498
Coord C2 exon
chr23:4318738-4318816
Length
68 bp
Sequences
Splice sites
3' ss Seq
AATGTATATGTTTTCCTCAGTTC
3' ss Score
6.77
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
AATGTCTGAGGACACTGTCCACAACTTACCAACTGCCCTCGACAGCGTATCTTATGAAATACAGAATCGAGCAGGATCTGAAAACTCACTGCTGGATGATGACGACGATGATGATTATTTTCTGAACTCTGGGGATTTGGCAAGCATACCTGTTGTTGGGAGTGACAACGAAGATGATCAAAATTTCACTCCGAAAGACACTCTCCCATCTGAAGACCATCTGGAAGAGGGCAAGAGGATTACAGAACACGAGCTGGACAGTGAAAAAGATATTCAGATCGAAAATGCAATCCAGAAGGATCTCACTTCACCTTTTGAGCAGGGTCCTGTATTTAAATCAATTCGAAAAGATTTTAGCATAACGAGAGATAATGGCAAAGAGACTTTTTCAACAAAGGACAAGAATAGAGAAGGAAATCTTCAAGAACATGAAAAACGGTTGGAAAAAATCCCTAAAGATACGGATTCTAGATTGAAAAGCAGTTTTCTTGACAAAGCAG
Seq A exon
TTCATAATCAAGTAGAAGAAACATTACGGACGCAGTTAGCGCCACAAACTCCAGAAACTAACTTCAGG
Seq C2 exon
GAGTACGGCCAACAGCCAAAAACTCAGGAAGGGGAGCTGAAAATCAGTGCTGTGTTTTCAGTCAGTGGCAGTCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499_MULTIEX1-4/24=3-6
Average complexity
C1
Mappability confidence:
96%=100=96%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=0.957 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAGATAATGGCAAAGAGACT
R:
TCAGCTCCCCTTCCTGAGTTT
Band lengths:
179-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]