GgaEX0003814 @ galGal4
Exon Skipping
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6976646-6978464:+
Coord C1 exon
chr17:6976646-6976769
Coord A exon
chr17:6977312-6977392
Coord C2 exon
chr17:6978289-6978464
Length
81 bp
Sequences
Splice sites
3' ss Seq
TAATCTGTAGTTTCCCATAGGCT
3' ss Score
4.31
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
CCAATTGGCTGCGATGGCATTCTCTTTTCCACCCACACCTTGGATAAATGTGGTGTTTGCCAAGGAGATGGGAGCAGCTGCACTCATGTGACGGGGAGTTACCGGAAAGGAAACGCTCATCTGG
Seq A exon
GCTATTCCCTGGTAACGCACATTCCTGCTGGAGCAAGGGATATCCAGATAGTGGAACGGAAAAAATCTGCAGATGTTCTGG
Seq C2 exon
CTGTGGCTGATGAAGCTGGGTACTATTTCTTCAACGGGAATTACAAAGTTGACAGCCCAAAGAACTTCAACATTGCAGGCACGGTGTTCAAGTACCGCTGGCCCATGGATGTCTATGAGACTGGCATAGAGTATATTGTTGCACAAGGACCAACAAACCAAGGATTGAACATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(11.9=33.3)
A:
PF059869=ADAM_spacer1=FE(22.9=100)
C2:
PF059869=ADAM_spacer1=FE(49.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAAAGGAAACGCTCATCT
R:
TGGTTTGTTGGTCCTTGTGCA
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]