MmuEX6099835 @ mm10
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27085051-27089759:+
Coord C1 exon
chr2:27085051-27085174
Coord A exon
chr2:27087211-27087291
Coord C2 exon
chr2:27089584-27089759
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATATGTTCCTATGCCCACAGGTT
3' ss Score
9.68
5' ss Seq
TGGGTGCGT
5' ss Score
5.46
Exon sequences
Seq C1 exon
CCCATTGGCTGTGATGGAGTACTCTTCTCCACCCACACGCTGGACAAGTGTGGTGTCTGCCAGGGGGACGGGAGCAGCTGCACCCACGTGACAGGCAACTACCGAAAGGGCAACAATCATCTTG
Seq A exon
GTTACTCCTTGGTGACCCATATTCCAGCTGGTGCCCGGGATATCCAGATTGTGGAGAGGAAGAAGTCAGCAGATGTGCTGG
Seq C2 exon
CCCTTGCAGATGAAGCTGGTTTCTACTTCTTCAATGGCAACTACAAAGTGGACAGCCCCAAGAACTTCAACATTGCTGGCACAGTGGTCAAGTACCGACGGCCCATGGATGTCTATGAGACTGGCATCGAGTATATAGTGGCACAGGGGCCCACCAACCAGGGCCTGAATGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'6-18,'6-11,14-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(11.9=33.3)
A:
PF059869=ADAM_spacer1=FE(22.9=100)
C2:
PF059869=ADAM_spacer1=FE(49.2=100)
Main Skipping Isoform:
ENSMUST00000091233fB319
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGTGTGGTGTCTGCCAG
R:
CTTGACCACTGTGCCAGCAAT
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types