HsaEX6063773 @ hg19
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136406000-136412335:+
Coord C1 exon
chr9:136406000-136406123
Coord A exon
chr9:136409592-136409672
Coord C2 exon
chr9:136412160-136412335
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTCATCCTTTTGCCTCCAGGTT
3' ss Score
11.02
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CCCATCGGCTGTGACGGGGTGCTTTTCTCCACCCACACACTGGACAAGTGTGGCATCTGCCAGGGGGACGGTAGCAGCTGCACCCACGTGACGGGCAACTATCGCAAGGGGAATGCCCACCTTG
Seq A exon
GTTACTCTCTGGTGACCCACATCCCGGCTGGTGCCCGAGACATCCAGATTGTAGAGAGGAAGAAGTCCGCTGACGTGCTAG
Seq C2 exon
CTCTTGCAGACGAAGCTGGCTACTACTTCTTCAACGGCAACTACAAGGTGGACAGCCCCAAGAACTTCAACATCGCAGGCACGGTGGTCAAGTACAGGCGGCCCATGGATGTCTATGAGACCGGAATCGAGTACATCGTGGCACAGGGGCCCACCAACCAGGGCCTGAATGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(11.9=33.3)
A:
PF059869=ADAM_spacer1=FE(22.9=100)
C2:
PF059869=ADAM_spacer1=FE(49.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTTCTCCACCCACACAC
R:
GAAGTTCTTGGGGCTGTCCAC
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)