GgaEX0005250 @ galGal4
Exon Skipping
Gene
ENSGALG00000003923 | COL6A3
Description
collagen alpha-3(VI) chain precursor [Source:RefSeq peptide;Acc:NP_990865]
Coordinates
chr7:4768466-4774336:+
Coord C1 exon
chr7:4768466-4769068
Coord A exon
chr7:4771552-4772151
Coord C2 exon
chr7:4773770-4774336
Length
600 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTGCTCTACCGCAGTTC
3' ss Score
9.21
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CCAAAGGCTGGAGGTTGGACCTGACCTGATCCAAGTTGCGGTGGCTCAGTATGCAGACACTGTGAGGCCAGAGTTTTATTTTAACACCCATCAGAACAGAAAGGATGTGATGGCTAATGTGAAGAAAATGAAGCTCATGGGCGGTACGGCCCTCAACACTGGCTCGGCACTGGACTTTGTGAGGAACAACTTCTTCACCAGTGCTGCCGGGTGTAGGATGGAGGAAGGGGTGCTCCCCATGCTGGTACTCATCACTGGTGGTAAGTCCATGGATGCCGTTGAGCAAGCTGCAGCAGAGATGAAAAGGAACAGGATAGTGATCCTTGCTGTTGGGTCGAGAAATGCTGACGTGGCAGAACTCCAAGAAATTGCTCATGAGAGAGATTTTGTGTTCCAACCAAATGATTTCCGCCTTCAGTTCATGCAAGCCATTCTTCCTGAGGTGCTGTCACCCATCCGGACACTCTCCGGAGGAATGGTCATCCACGAAACACCATCAG
Seq A exon
TTCAAGTAACCAAAAGGGATATCATCTTTCTTTTGGATGGATCACTCAACGTCGGAAATGCCAACTTCCCCTTTGTGCGGGACTTTGTTGTGACTTTAGTTAACTACCTTGATGTCGGAACCGACAAAATCCGAGTTGGCTTAGTGCAATTTAGCGACACTCCTAAAACCGAGTTCTCCCTATACTCATACCAAACCAAATCAGACATAATTCAACGTTTGGGGCAGCTGAGGCCCAAGGGTGGGTCAGTGCTGAACACCGGCTCTGCACTGAACTTTGTGCTTTCGAATCACTTCACTGAAGCTGGTGGGAGCAGAATAAATGAACAAGTGCCGCAGGTCCTAGTCCTGGTGACGGCAGGGAGGTCGGCCGATCCCTTCCTGCAAGTTTCCAATGACTTAGCTCGGGCCGGAGTGCTGACTTTTGCTGTTGGAGTTAGGAATGCGGATAAGGCAGAGCTTGAACAGATTGCATTTAATCCAAAAATGGTATATTTTATGGATGATTTCAGTGATCTGACAACATTACCTCAGGAGTTAAAAAAGCCTATAACAACATATGTTAGTGGAGGTGTGGAGGAGGTTCCACTCGCCCCAACAG
Seq C2 exon
AAAGCAAGAAAGACATTTTATTCCTGATTGATGGTTCAGCCAACCTCTTGGGTAGCTTTCCTGCTGTCCGGGACTTTATACACAAAGTCATTTCTGACCTGAACGTGGGTCCCGACGCCACGCGAGTAGCTGTGGCTCAGTTCAGTGACAACATCCAAATTGAATTTGACTTTGCTGAACTCCCATCTAAGCAAGACATGCTTCTGAAAGTGAAAAGGATGAGGTTAAAAACTGGGAAGCAGCTGAATATCGGAGTTGCGCTCGATGAAGTCATGAGGAGGCTGTTCGTGAAGGAAGCTGGAAGCAGGATTGAAGAAGGCATTCCTCAGTTCTTGGTCCTCCTGGCTGCTGGGAGGTCAACCGATGAGGTGGAGCGACCATCGGGAGCTCTGAAGGAAGCTGGAGTTGTGACCTTTGCTATCAAAGCCAAAAATGCTGATTTATCAGAGCTGGAAAGGATAGCTTACGCCCCACAGTTCATTCTGAATGTCGAATCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003923_MULTIEX4-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=85.6)
A:
PF0009223=VWA=WD(100=88.1)
C2:
PF0009223=VWA=WD(100=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCTTCCTGAGGTGCTG
R:
TGACTTCATCGAGCGCAACTC
Band lengths:
346-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]