GgaEX0005251 @ galGal4
Exon Skipping
Gene
ENSGALG00000003923 | COL6A3
Description
collagen alpha-3(VI) chain precursor [Source:RefSeq peptide;Acc:NP_990865]
Coordinates
chr7:4768466-4779653:+
Coord C1 exon
chr7:4768466-4769068
Coord A exon
chr7:4777392-4778012
Coord C2 exon
chr7:4779054-4779653
Length
621 bp
Sequences
Splice sites
3' ss Seq
CCCTTACTTGTCTCAAACAGTAG
3' ss Score
6.41
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCAAAGGCTGGAGGTTGGACCTGACCTGATCCAAGTTGCGGTGGCTCAGTATGCAGACACTGTGAGGCCAGAGTTTTATTTTAACACCCATCAGAACAGAAAGGATGTGATGGCTAATGTGAAGAAAATGAAGCTCATGGGCGGTACGGCCCTCAACACTGGCTCGGCACTGGACTTTGTGAGGAACAACTTCTTCACCAGTGCTGCCGGGTGTAGGATGGAGGAAGGGGTGCTCCCCATGCTGGTACTCATCACTGGTGGTAAGTCCATGGATGCCGTTGAGCAAGCTGCAGCAGAGATGAAAAGGAACAGGATAGTGATCCTTGCTGTTGGGTCGAGAAATGCTGACGTGGCAGAACTCCAAGAAATTGCTCATGAGAGAGATTTTGTGTTCCAACCAAATGATTTCCGCCTTCAGTTCATGCAAGCCATTCTTCCTGAGGTGCTGTCACCCATCCGGACACTCTCCGGAGGAATGGTCATCCACGAAACACCATCAG
Seq A exon
TAGTTGAGAGAGGTGAGAAGAAGGATGTGGTGTTTCTAATCGATGGCTCGGATGGTGTCAGAAGAGGTTTCCCTCTCCTGAAAACCTTTGTGGAAAGAGTTGTTGAAAGCCTTGATATTGGCCGTGACAAGGTCCGTGTTGCCATTGTGCAGTACAGCAACGCCATACAACCTGAGTTCTTGCTGGATGCCTACGAAGACAAAGCCGATTTAGTCAGTGCCATCCAGGCGCTGACAATTATGGGAGGATCTCCTCTGAACACCGGAGCAGCCCTCGACTATCTCATCAAGAACGTGTTCACCGTGTCGAGTGGCAGCAGGATAGCTGAGGGCGTCCCGCAGTTCCTGATCCTGCTCACTGCCGACCGATCCCAGGATGATGTGAGGAGGCCCTCAGTGGTCCTCAAGACGAGTGGCACAGTGCCCTTCGGCATCGGGATTGGAAATGCCGACCTCACAGAGCTTCAGACGATCTCCTTCCTCCCGGATTTTGCTATCTCTGTACCCGACTTCAGCCAGCTGGATTCAGTGCAACAGGCCGTGTCCAACAGAGTCATCCGGCTGACCAAGAAAGAAATAGAGTCTCTTGCCCCTGATCTGGTTTTTACATCACCCAGCCCAG
Seq C2 exon
TGGGTGTGAAGAGGGATGTTGTGTTCCTGGTCGATGGCTCCCGCTACGCCGCCCAGGAATTCTACCTCATCCGTGATCTCATTGAGAGGATAGTGAACAACCTGGATGTGGGCTTTGACACCACTCGGATTTCGGTGGTCCAGTTCAGCGAGCATCCCCATGTAGAGTTTCTTCTCAATGCCCACTCCACCAAGGATGAGGTGCAAGGTGCAGTGAGGCGGCTGCGGCCACGGGGTGGCCAGCAGGTGAACGTGGGGGAAGCCCTTGAATTTGTGGCAAAAACCATCTTTACCCGTCCGTCTGGGAGCCGCATAGAAGAGGGCGTCCCTCAGTTTTTGGTTATCCTCTCCTCCCGCAAGTCCGACGATGACTTAGAATTCCCATCGGTACAAGTCAAACAAGTAGGAGTGGCACCTATGGTCATAGCAAAGAACATGGATCCTGAGGAGATGGTGCAGATTTCCCTTAGCCCTGACTATGTGTTCCAAGTCTCCAGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003923_MULTIEX4-3/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=85.6)
A:
PF0009223=VWA=WD(100=84.1)
C2:
PF0009223=VWA=WD(100=85.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAATGCTGACGTGGCAGA
R:
GGTGGAGTGGGCATTGAGAAG
Band lengths:
355-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]