MmuEX0012333 @ mm9
Exon Skipping
Gene
ENSMUSG00000048126 | Col6a3
Description
collagen, type VI, alpha 3 [Source:MGI Symbol;Acc:MGI:88461]
Coordinates
chr1:92704048-92708408:-
Coord C1 exon
chr1:92707836-92708408
Coord A exon
chr1:92706703-92707305
Coord C2 exon
chr1:92704048-92704653
Length
603 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCCCTTCAATTTCAGGTG
3' ss Score
12.07
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTTTCTCTACAGGATCATTGAGGAACTTGATGTGAAGCCGGATGGGACCCGGGTAGCAATAGCTCAGTTCAGTGATGACGTCAGGCTGGAGTCCCGCTTCAGTGAGCACCAGACGAAAGCTGAAATCCTTAATCTCGTGAAGAAGATGAAGCTAAAAACAGGCAAAGCCCTCAACCTGGGCTACGCCCTGGACTACGCGCTTAGGAACATCTTTGTGAGGTCGGCTGGCAGCCGCATCGAGGATAACGTGCAGCAGTTCCTGGTGCTGCTGGTTGCTGGAAGGTCGTCAGATGCTGTGGCCGGGCCTGCAAGCTCCCTGAAGCAGAGAGGAGTGGTACCTTTCATCTTTCAAGCCAAGAACGCCAACCCCAGTGAGCTGGAGCAGATTGTGCTGTCGCCTGCATTCATCCTGGCTGCAGAGTCACTCCCTAAGATCGGAGACCTCCAATCACAGATTGTGAGCCTTCTGAAAGCAGAACAGGGTTCAGGCCCTGTATCAG
Seq A exon
GTGAAAAGGATGTGGTGTTTCTCATTGATGGCTCTGAGGGTGTCCGCAGTGGCTTCCCCCTGCTAAAGGACTTTGTGCAGAGGGTTGTGGAGAGCTTGGATGTGGGTCCCGACCGTGTGCGTGTGGCACTGGTGCAGTACAGTGACCGGACCAGGCCGGAGTTCTACCTGAATTCCCACATGGACCAGCAGGGTGTCATCAGCGCCATCCGCAGGCTGACACTGCTGGGCGGCCCAACCCCCAACACAGGGGCGGCACTGGAGTTCGTGTTAAGGAACATTCTGACCAGTTCTACTGGGAGCAGGATAGCAGAAGGTGTTCCTCAGCTCCTGATTGTCCTCACAGCAGAGCCATCAGGGGATGACGTGCGAGGCCCTTCAGTAGTCCTGAAGCAGGGCGGGGCTGTGCCCATTGGCATTGGCATTGGGAATGCTGACATCTCTGAAATGCAGACCATCTCCTTCATCCCTGACTTTGCTGTGGCCATCCCCACCTTCCGGGAGCTTGGGACGATACAGCAGGTCATCTCTGAGAGGGTGATCCAGCTTAATCGTGAGGAGCTGAGCTCGTTGAAACCCATTTTGACGCCCTCAACAGGTGCAG
Seq C2 exon
GTGTTGGCAGCAAGAAAGATGTGGTCTTTCTCATCGATGGATCCCGAAATGCTGGCCCTGAGTTCCAGTACATCCGTACCCTGATTGAGAGGATAGTCGAGTACCTGGACATAGGCTTTGACACCACCCGGGTAGCCGTCATCCAGTTCAGTGAGGACTCCAAGATGGAGTTTCCTCTGAATGCCCACTTCAGCAAGGATGAAGTACAGAACGCTGTGCGCAGGCTGCGGCCCAAGGGTGGGAGTCAGGTCTACATCGGAAATGCCCTGGAGTACGTGCTGAAGAACATCTTCCAGAGGCCACTGGGGAGCCGGATAGAAGAGGGCGTTCCGCAGTTCCTAGTCCTCATTTCGTCTGGAAAGTCTGATGATGAGGTGGACGACTCAGCCGTGGAACTCAAGCAGTTCGGTGTGGCCCCTCTCACCATAGCCAGACACACAGACCAAGAGGAGCTGGTGAAGATCTCCCTAAGTCCTGAGTACGTGTACTCCGTGAGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048126_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=90.1)
A:
PF0009223=VWA=WD(100=86.6)
C2:
PF0009223=VWA=WD(100=84.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGAAGCAGAGAGGAGTG
R:
CTCACTGAACTGGATGACGGC
Band lengths:
342-945
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: