BtaEX6019300 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030190 | COL6A3
Description
collagen, type VI, alpha 3 [Source:HGNC Symbol;Acc:HGNC:2213]
Coordinates
chr3:117459803-117466186:-
Coord C1 exon
chr3:117465614-117466186
Coord A exon
chr3:117462934-117463542
Coord C2 exon
chr3:117459803-117460408
Length
609 bp
Sequences
Splice sites
3' ss Seq
AGAGGCGGTCTTCCTTGTAGTTT
3' ss Score
5.25
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
CTTTCTCTACAAGGTCATCGACGAGCTGGATGTGAAACCTGAGGGGACCCGGGTTGCAGTGGCTCAGTTCAGTGATGATGTCAAGGTGGAGTCCCGTTTTGACCAGCACCAGAATAAGCCTGAGATCCTGAATCTCGTGAAGAGGATGAAGCTCAAGACAGGCAAAGCCCTCAACCTGGGCTACGCCTTGGATTACGCACAGAGGTACATCTTTGTGAAGTCCGCTGGAAGCCGGATTGAGGATGGAGTGCTTCAGTTCCTGGTGCTGCTGGTGGCGGGAAAGTCATCGGACCGGGTGGATACACCCGCACTCAACCTGAAGCAGAGCGGGGTGGTGCCCTTCATCCTCCAGGCGAAAAACGCGGACCCTGCTGAGTTGGAGCTGATCGTACCATCCCCAGCCTTTATTTTGGTTGCGGAGTCCCTTCCTAAGATTGGAGACCTGCAACCACAGATTGTGAACCTCTTAAAATCAGTGCAAAATGGGGCACCGGCACCAG
Seq A exon
TTTCAGTTGAAAAGGATGTGGTGTTCCTGATTGATGGCTCCGAGGGTGTCAGGAGCGGCTTCCCACTGCTGAAGGAGTTCGTCCAGAGAGTGGTGGAGAGCCTGGACGTGGGACCAGACCGGGTGCGTGTGGCCGTGGTGCAGTACAGCGACCGGACCAGACCTGAGTTCTACCTGAATTCCTACATGGACCAGCAGAGTGTGGTCGGAGCCATCCGTGGGCTGACCCTGCTGGGCGGGCCGGCCCCCAACACAGGGGCTGCCCTGGAGTTCGTCCTGAGGAACATCCTGGTGGGCTCTGCTGGGAGCCGCATAGCAGAAGGTGTCCCCCAGCTCCTGATTGTCCTCACGGCCGACAGGTCTGGGGATGACGTGAGGGGCCCCTCTGTGGTCCTGAGGAGGGGAGGGGCCGTGCCCATCGGCATCGGCATTGGGAACGCTGACATCACCGAGATGCAGACCCTCTCCTTCGTCCCGGACTTCGCCGTGGTCATCCCCACCTTCCGGCAGCTGGGGACCATCCAACAGGTCATCTCGGAGAGAGTGACCCAGCTCAGCCGCGAGGAACTGAGCAGGCTGCAGGCGTCTGTCACCCCCTTGACGACTCCGG
Seq C2 exon
TGGTCAGCAGCAAGAGGGACGTGGTCTTTCTCATCGATGGGTCCCAGAGTGCTGGCCCCGAGTTCCAGTACATCCGAACGCTCATCGAGAGGCTGGTGGACTACCTGGATGTGGGCTTCGACACGACCCGGGTGGCGGTCATCCAGTTCAGCGATGACCCCAGGGTGGAGTTCCTGTTGAACGTCCACTCCAGCAAGGACGAGGTGCAGAACGCCGTGCGGCGGCTGCGGCCCAAAGGTGGGAGGCAGGTCAACGTTGGGGGTGCCCTGGAGTACGTGGCCAGGAACATCTTCAAGAGGCCCCTGGGGAGCCGGATTGAGGAGGGTGTCCCTCAGTTCCTGGTCCTCATTTCCTCCGGGAAGTCGGATGATGAGGTGGAGGACTCGGCCATAGAGCTCAAGCAGTTTGGCGTGGCGCCACTCACGATCGCCAGGAACGTGGACCAGGAAGAGCTGGTGAAGATCTCGCTGAGCCCCGAGTACGTGTTCTCAGTGAACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030190-'6-14,'6-11,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=90.1)
A:
PF0009223=VWA=WD(100=85.3)
C2:
PF0009223=VWA=WD(100=84.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCTCCAGGCGAAAAACG
R:
TTGCTGGAGTGGACGTTCAAC
Band lengths:
355-964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]