GgaEX0005257 @ galGal4
Exon Skipping
Gene
ENSGALG00000003924 | ACBD6
Description
acyl-CoA-binding domain-containing protein 6 [Source:RefSeq peptide;Acc:NP_001264476]
Coordinates
chr8:5925724-5957040:+
Coord C1 exon
chr8:5925724-5925813
Coord A exon
chr8:5954212-5954242
Coord C2 exon
chr8:5956608-5957040
Length
31 bp
Sequences
Splice sites
3' ss Seq
CAAGTCTTGTTCTCTTTCAGGAT
3' ss Score
10.99
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGCAGGGCTCTGCTCCACTGGGCATGCGACAGAGGACACAAGGAGCTCGTTTCAGTACTGTTGCAACACGCTGCCGATGTTAACAGCCAG
Seq A exon
GATGGGGAAGGCCAGACTGCGCTCCATTACG
Seq C2 exon
CCTCCGCCTGCGAGTTCTCCGACATCGTGGAGCTGCTGCTGCAATCCGGGGCCGACCCCACACTGCGGGACAAGGAGGGCTGCCTGCCAGAGGAGGTGACAGACTGTAAGGCCATCACGTCGGCCCTGCAGCGGCACACTGCCGGCAAGGTGTAGCCGTGCCATGCGGCCGGACGGGTACCGTCGTGCAGCAAAGCCCTGCTCTCCCCCAAGCAGGCTGAGGGTCAGGGTTTTGCATGCTCTGACATCAAGCAGTATTCCGAGGGAGGGAGGGGGCACGGGGCTTGGATAGGGCCCCGTGTTTTAGTGCACACTGCCAGGGAGGGCTGCTGGCACGGCCGGGGCCGTGGGGCTGCGTTACCGTTTGGGTTGTTTTTTTCTCTTGGGTCCAAGCAAAATATTATAAATAAAACAAGCACAGTGTTGGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003924-'15-31,'15-29,18-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(25.4=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCGATGTTAACAGCCAG
R:
ACAGTCTGTCACCTCCTCTGG
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]