HsaEX0001846 @ hg19
Exon Skipping
Gene
ENSG00000135847 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:23339]
Coordinates
chr1:180257405-180366740:-
Coord C1 exon
chr1:180366651-180366740
Coord A exon
chr1:180283827-180283857
Coord C2 exon
chr1:180257405-180257652
Length
31 bp
Sequences
Splice sites
3' ss Seq
ATTATTTGTTTCTTTTATAGGAC
3' ss Score
10.81
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGTAGGGCTCTACTTCACTGGGCCTGTGATCGAGGACATAAGGAACTAGTCACAGTGTTGCTGCAACATAGAGCTGACATTAACTGTCAG
Seq A exon
GACAATGAAGGCCAAACAGCTCTACATTATG
Seq C2 exon
CCTCTGCCTGTGAGTTTCTGGATATTGTAGAGCTGCTGCTCCAGTCTGGTGCTGACCCCACTCTCCGAGACCAGGATGGCTGCCTGCCAGAGGAGGTGACAGGCTGCAAAACAGTTTCTTTGGTGCTGCAGCGGCACACAACTGGCAAGGCTTAATCAAAAGACTGGAAAACTGCAGTCTGTAATAGCATAAGGCTTCCATTATGAAAGAAAACTACAAAAATAATACTTCTTTTCCACCCGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135847-'9-14,'9-12,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(31.2=100)
A:
PF127962=Ank_2=FE(10.8=100)
C2:
PF127962=Ank_2=PD(24.7=44.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGCTCTACTTCACTGGGC
R:
GCAGCAGCTCTACAATATCCAGA
Band lengths:
127-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)