DreEX0010607 @ danRer10
Exon Skipping
Gene
ENSDARG00000039456 | acbd6
Description
acyl-CoA binding domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2810]
Coordinates
chr8:14367630-14404107:+
Coord C1 exon
chr8:14367630-14367719
Coord A exon
chr8:14395054-14395084
Coord C2 exon
chr8:14401811-14404107
Length
31 bp
Sequences
Splice sites
3' ss Seq
TTTATCTATTTCTGTCACAGGAT
3' ss Score
9.97
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGCCGAGCTCTCCTGCACTGGGCGTGTGACAGGGGCCATAAAGACCTGGTGTCTCTTCTCCTGCAAAATAATGCTGATATCAATAGTCAG
Seq A exon
GATGATGAAGGACAAACTGCTCTGCACTATG
Seq C2 exon
CCTCAGCTTGTGAGTTTGCAGAAATCGTCGAGTTACTCCTTAAAGCCGGAGCTGACCCATCTATCAAAGATCAAGAAGGCTCCCTTCCAGAGGAGGTGACAGAATCTAGTGCCATCTCTTCTCTCCTGCGCCAGTACACTGCTCCTAAAGGCTAAAGCCAACAATTTATTCACACTAACTGTGCTCCTCATCCAAATGGTGCAGACCTGCTGTAAAACCCACATCAGCTCAGCATTCAAGAACCAAACTCAATCAACTCAGCATACTTTAGTACCAAACTTAATCAACTCTACAACTGAACTCAACATTATAGACCTGAACTTTCTTTAGAATGAGCTGATGGAATTAAAAACCTCAATTTTATTACCACCAGCTCAGCATTTCAGAATTCAACTCAACATTTTAGAACTGAACTCCATTGGCTCATCGTTTCAAAACTGAAATCCATCAGCTCATCATGGTTTAAGAACAGTTCTAGAATGCTGAGTTGATGTAGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039456_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.455 C2=0.314
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(31.2=100)
A:
PF127962=Ank_2=FE(10.8=100)
C2:
PF127962=Ank_2=PD(24.7=44.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATAAAGACCTGGTGTC
R:
TGATAGATGGGTCAGCTCCGG
Band lengths:
124-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]